raxml-devenv (0.3)
Published 2025-08-11 10:33:22 +02:00 by christoph
Installation
docker pull git.ch-st.de/christoph/raxml-devenv:0.3sha256:a2611c5f47d855e771c0cf9d8ced347f5d4be109eb4dd1db8d55ced02b495398Image layers
| # debian.sh --arch 'amd64' out/ 'bookworm' '@1747699200' |
| /bin/sh -c apt update -qq && apt install -y -qq vim vim-pathogen vim-fugitive vim-ultisnips python3 python3-virtualenv python3-pylsp python3-pylsp-black sqlite3 w3m git git-flow git-lfs git-man cmake clang clangd build-essential binutils-dev valgrind gdb meson ninja-build fzf zsh cloc curl wget ripgrep btop htop jq xq tmux ranger ncdu pv zstd rsync man-db r-base doxygen doxygen-doc graphviz graphviz-doc doxygen-latex pandoc libjs-katex libjs-mathjax linux-perf libopenmpi-dev mpich openmpi-bin openmpi-doc openmpi-common libopenmpi3 terminfo foot-terminfo kitty-terminfo libgtest-dev libgmock-dev protobuf-compiler libprotoc-dev ltrace strace rr libpcrecpp0v5 libpcre3-dev gdbserver abi-dumper termdebug lsof tcpdump && apt clean && rm -rf /var/lib/apt/lists/* |
| ADD 31223b430992cf5ba11887a8e6200703b6e93df2db75b7aa1730630f1a8c6d13 in /tmp/arrow-apt-source.deb |
| /bin/sh -c apt install /tmp/arrow-apt-source.deb && apt update && apt install -y -qq libarrow-dev libarrow-dataset-dev libparquet-dev && rm -rf /var/lib/apt/lists/* /tmp/arrow-apt-source.deb |
| /bin/sh -c cd /tmp && wget -qO scorep.tar.gz https://perftools.pages.jsc.fz-juelich.de/cicd/scorep/tags/scorep-9.2/scorep-9.2.tar.gz && tar xf scorep.tar.gz && cd scorep-9.2 && mkdir _build && cd _build && ../configure --with-mpi=openmpi --with-shmem=openmpi --with-libgotcha=download && make && make install && cd / && rm -rf /tmp/scorep-9.2 /tmp/scorep.tar.gz |
| /bin/sh -c cd /tmp && wget -q https://hpc.rwth-aachen.de/must/files/MUST-v1.11.0.tar.gz && tar xf MUST-v1.11.0.tar.gz && cd MUST-v1.11.0 && cmake -B cmake-build-release -S . -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/usr/local && cmake --build cmake-build-release -t install && cd / && rm -rf /tmp/MUST-v1.11.0.tar.gz /tmp/MUST-v1.11.0 |
| /bin/sh -c cd /tmp && wget -qO benchmark.tar.gz https://github.com/google/benchmark/archive/refs/tags/v1.9.4.tar.gz && tar xf benchmark.tar.gz && cd benchmark-1.9.4 && cmake -B cmake-build-release -S . -DBENCHMARK_DOWNLOAD_DEPENDENCIES=on -DCMAKE_BUILD_TYPE=Release && cmake --build cmake-build-release --config Release -t install && cd / && rm -rf /tmp/benchmark.tar.gz benchmark-1.9.4 |
| /bin/sh -c mkdir -p /home/stelzch /hits/fast/cme/stelzch /data && chsh -s /bin/zsh |
| ENV HOME=/home/stelzch SHELL=/bin/zsh EDITOR=vim |
| CMD ["/bin/sh" "-c" "/bin/zsh"] |